sainsc.LazyKDE.kde

sainsc.LazyKDE.kde(gene, *, threshold=None)

Calculate kernel density estimate (KDE).

The kernel will be used from sainsc.LazyKDE.kernel.

Parameters:

• gene (Sequence[str]) – List of genes for which to calculate the KDE.

• threshold (float, optional) – Relative threshold of maximum of the kernel that is used to filter beads. All values below \(threshold * max(kernel)\) are set to 0. Filtering is done after calculating the KDE which sets it apart from reducing truncate.

See also

sainsc.LazyKDE.gaussian_kernel()