sainsc.io.read_Atera

sainsc.io.read_Atera(filepath, *, binsize=0.5, remove_features=ATERA_CTRLS, n_threads=None)

Read an Atera transcripts file.

Parameters:

  • filepath (PathLike or str) – Path to the Atera transcripts file (.parquet).

  • binsize (float, optional) – Size of each bin in um.

  • remove_features (Collection[str], optional) – List of regex patterns to filter the ‘feature_name’ column, sainsc.io.ATERA_CTRLS by default. The data is automatically filtered with the ‘is_gene’ column, as well.

  • n_threads (int | None, optional) – Number of threads used for processing. If None or 0 this will default to the number of available CPUs.

Return type:

LazyKDE